The QuantSeq data analysis pipelines on the BlueBee® Genomics Platform offer the opportunity to analyze QuantSeq samples in a convenient and fast way, even without bioinformatics experience.

The pipelines on the BlueBee® Genomics Platform are accessible through a complimentary code provided with QuantSeq kits. Activation codes for additional runs can be purchased from Lexogen via the webshop. For using your activation code register an account with BlueBee ( and upload your data (fastq.gz files).

Additional Activation codes are available for purchase in single run, or 24-run packages. A run is defined as the analysis of 1 fastq file using the QuantSeq FWD, FWD-UMI, or REV, Data Analysis Pipeline.

NOTE! Before starting your library prep, please check the online Frequently Asked Questions (FAQs) (e.g., for QuantSeq FWD (1.27) or QuantSeq REV (1.28)), or contact to see if your species is available on the BlueBee Platform. Lexogen can add reference genomes for new species to the BlueBee Data Analysis Pipeline upon request. Please note this will incur a fee.
New reference genome implementation timelines are dynamic due to feasibility checks and formatting adjustments and therefore cannot be precisely guaranteed. We recommend submitting your request as early as possible prior to sequencing your libraries. New genome upload acceptance is also subject to change in the case of compatibility issues. For all related enquiries, please contact

NOTE! Please be aware that the BlueBee® activation codes are currently not automatically generated. It might therefore take up to one working day for you to receive your valid code. Activation codes registered after September 20, 2018 are valid for two years.


  • Activation code for 24 runs for standard data analysis (up to 1.5 GB per fastq(.gz) file).
  • Individual codes for additional data analysis runs with large input file sizes up to 3 or 6 GB.